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Reactivated all tests

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This commit is contained in:
Chris Cheshire 2022-05-13 12:01:16 +01:00
parent 90c67794bf
commit d816f2bc5d
1 changed files with 33 additions and 37 deletions
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70
tests/modules/bowtie2/align/test.yml
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@ -5,43 +5,39 @@
- bowtie2/align
files:
- path: ./output/bowtie2/test.bam
# - path: output/bowtie2/test.bowtie2.log
# md5sum: 7b8a9e61b7646da1089b041333c41a87
# - path: output/bowtie2/versions.yml
# md5sum: 24621c58884fe90c2255ccd1fe4352ae
- path: ./output/bowtie2/test.bowtie2.log
- path: ./output/bowtie2/versions.yml
md5sum: 24621c58884fe90c2255ccd1fe4352ae
# - name: bowtie2 align test_bowtie2_align_paired_end
# command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config -c tests/modules/bowtie2/align/nextflow.config
# tags:
# - bowtie2
# - bowtie2/align
# files:
# - path: output/bowtie2/test.bam
# - path: output/bowtie2/test.bowtie2.log
# md5sum: bd89ce1b28c93bf822bae391ffcedd19
# - path: output/bowtie2/versions.yml
# md5sum: f9712ca6d75393ad5c1781a2dcf82d32
- name: bowtie2 align test_bowtie2_align_paired_end
command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config -c tests/modules/bowtie2/align/nextflow.config
tags:
- bowtie2
- bowtie2/align
files:
- path: ./output/bowtie2/test.bam
- path: ./output/bowtie2/test.bowtie2.log
- path: ./output/bowtie2/versions.yml
md5sum: f9712ca6d75393ad5c1781a2dcf82d32
# - name: bowtie2 align test_bowtie2_align_single_end_large_index
# command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_single_end_large_index -c tests/config/nextflow.config -c tests/modules/bowtie2/align/nextflow.config --force_large_index
# tags:
# - bowtie2
# - bowtie2/align
# files:
# - path: output/bowtie2/test.bam
# - path: output/bowtie2/test.bowtie2.log
# md5sum: 7b8a9e61b7646da1089b041333c41a87
# - path: output/bowtie2/versions.yml
# md5sum: bf0537964a85ce9461ae1b0e2f260211
- name: bowtie2 align test_bowtie2_align_single_end_large_index
command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_single_end_large_index -c tests/config/nextflow.config -c tests/modules/bowtie2/align/nextflow.config --force_large_index
tags:
- bowtie2
- bowtie2/align
files:
- path: ./output/bowtie2/test.bam
- path: ./output/bowtie2/test.bowtie2.log
- path: ./output/bowtie2/versions.yml
md5sum: bf0537964a85ce9461ae1b0e2f260211
# - name: bowtie2 align test_bowtie2_align_paired_end_large_index
# command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end_large_index -c tests/config/nextflow.config -c tests/modules/bowtie2/align/nextflow.config --force_large_index
# tags:
# - bowtie2
# - bowtie2/align
# files:
# - path: output/bowtie2/test.bam
# - path: output/bowtie2/test.bowtie2.log
# md5sum: bd89ce1b28c93bf822bae391ffcedd19
# - path: output/bowtie2/versions.yml
# md5sum: c0a88953500eaf46de7ff378a7de4a37
- name: bowtie2 align test_bowtie2_align_paired_end_large_index
command: nextflow run tests/modules/bowtie2/align -entry test_bowtie2_align_paired_end_large_index -c tests/config/nextflow.config -c tests/modules/bowtie2/align/nextflow.config --force_large_index
tags:
- bowtie2
- bowtie2/align
files:
- path: ./output/bowtie2/test.bam
- path: ./output/bowtie2/test.bowtie2.log
- path: ./output/bowtie2/versions.yml
md5sum: c0a88953500eaf46de7ff378a7de4a37