diff --git a/software/ivar/consensus/main.nf b/software/ivar/consensus/main.nf index 63cadf43..05fa13d5 100644 --- a/software/ivar/consensus/main.nf +++ b/software/ivar/consensus/main.nf @@ -42,6 +42,6 @@ process IVAR_CONSENSUS { $options.args \\ -p $prefix - ivar version | head -n1 2>&1 | sed 's/^.*iVar version //g' > ${software}.version.txt + echo \$(ivar version 2>&1) | sed 's/^.*iVar version //; s/ .*\$//' > ${software}.version.txt """ } diff --git a/software/ivar/trim/main.nf b/software/ivar/trim/main.nf index 4c1c5fbd..03dbdd9a 100644 --- a/software/ivar/trim/main.nf +++ b/software/ivar/trim/main.nf @@ -38,6 +38,6 @@ process IVAR_TRIM { -p $prefix \\ > ${prefix}.ivar.log - ivar version | head -n1 2>&1 | sed 's/^.*iVar version //g' > ${software}.version.txt + echo \$(ivar version 2>&1) | sed 's/^.*iVar version //; s/ .*\$//' > ${software}.version.txt """ } diff --git a/software/ivar/variants/main.nf b/software/ivar/variants/main.nf index 85ad9463..343536cd 100644 --- a/software/ivar/variants/main.nf +++ b/software/ivar/variants/main.nf @@ -45,6 +45,6 @@ process IVAR_VARIANTS { -r $fasta \\ -p $prefix - ivar version | head -n1 2>&1 | sed 's/^.*iVar version //g' > ${software}.version.txt + echo \$(ivar version 2>&1) | sed 's/^.*iVar version //; s/ .*\$//' > ${software}.version.txt """ }