Copy across test data and docs for bwa index

software/bwa/index/meta.yml

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+name: bwa index
+description: create indexes for BWA from a fasta file
+keywords:
+    - index
+tools:
+    - bwa:
+        description: |
+            BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome.
+        homepage: http://bio-bwa.sourceforge.net/
+        documentation: http://www.htslib.org/doc/samtools.html
+        arxiv: arXiv:1303.3997
+input:
+    -
+        - input:
+            type: file
+            description: Input fasta file
+            pattern: "*.{fasta,fa}"
+output:
+    -
+        - index:
+            type: file
+            description: bwa indexes file
+            pattern: "*.{fasta,fa}.{amb,ann,bwt,pac,sa}"
+authors:
+    - "@maxulysse"

software/bwa/index/test/main.nf

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+#!/usr/bin/env nextflow
+nextflow.preview.dsl = 2
+include '../../../tests/functions/check_process_outputs.nf' params(params)
+include '../main.nf' params(params)
+
+// Define input channels
+input = '../../../test-datasets/tools/bwa/index/input/reference.fasta'
+Channel
+  .from(input)
+  .set { ch_input }
+
+// Run the workflow
+workflow {
+    fastqc(ch_input)
+    // .check_output()
+}

software/bwa/index/test/nextflow.config

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+docker.enabled = true
+params.outdir = './results'