From da56a2d50968f12ff2aa1a6d6b05fae083ba26c3 Mon Sep 17 00:00:00 2001
From: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
Date: Fri, 22 Apr 2022 19:36:08 +0200
Subject: [PATCH] Update modules/bamtools/split/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
---
 modules/bamtools/split/main.nf | 2 --
 1 file changed, 2 deletions(-)

diff --git a/modules/bamtools/split/main.nf b/modules/bamtools/split/main.nf
index 9c643b84..aaa5b663 100644
--- a/modules/bamtools/split/main.nf
+++ b/modules/bamtools/split/main.nf
@@ -21,8 +21,6 @@ process BAMTOOLS_SPLIT {
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
     def input_list = bam.collect{"-in $it"}.join(' ')
-    def stub =  !args.contains("-stub") ? "-stub ${prefix}" : ""
-
     """
     bamtools \\
         merge \\