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removed index from test output

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This commit is contained in:
kevinmenden 2020-12-18 11:06:02 +01:00
parent 299a3fa07e
commit db0b631906
2 changed files with 19 additions and 19 deletions
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2
software/bowtie/index/main.nf
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@ -29,7 +29,7 @@ process BOWTIE_INDEX {
def software = getSoftwareName(task.process)
"""
mkdir bowtie
bowtie-build --threads $task.cpus $fasta bowtie/${fasta.baseName}.index
bowtie-build --threads $task.cpus $fasta bowtie/${fasta.baseName}
echo \$(bowtie --version 2>&1) | sed 's/^.*bowtie-align-s version //; s/ .*\$//' > ${software}.version.txt
"""
}

36
tests/software/bowtie/test.yml
View file

@ -4,17 +4,17 @@
- bowtie
- bowtie_index
files:
- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
- path: output/bowtie/bowtie/NC_010473.1.ebwt
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
- path: output/bowtie/bowtie/NC_010473.2.ebwt
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
- path: output/bowtie/bowtie/NC_010473.3.ebwt
md5sum: cd201e81724f3099131aec16ef2cc53b
- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
- path: output/bowtie/bowtie/NC_010473.4.ebwt
md5sum: bbb9d6d21ad765d135f95290204e8433
- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
- path: output/bowtie/bowtie/NC_010473.rev.1.ebwt
md5sum: 44f719c2fe42e1f35d54e798775846d1
- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
- path: output/bowtie/bowtie/NC_010473.rev.2.ebwt
md5sum: f3c398bba5158f4039334a932d79c051
- name: Run bowtie index and align single-end
@ -23,17 +23,17 @@
- bowtie
- bowtie_align
files:
- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
- path: output/bowtie/bowtie/NC_010473.1.ebwt
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
- path: output/bowtie/bowtie/NC_010473.2.ebwt
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
- path: output/bowtie/bowtie/NC_010473.3.ebwt
md5sum: cd201e81724f3099131aec16ef2cc53b
- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
- path: output/bowtie/bowtie/NC_010473.4.ebwt
md5sum: bbb9d6d21ad765d135f95290204e8433
- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
- path: output/bowtie/bowtie/NC_010473.rev.1.ebwt
md5sum: 44f719c2fe42e1f35d54e798775846d1
- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
- path: output/bowtie/bowtie/NC_010473.rev.2.ebwt
md5sum: f3c398bba5158f4039334a932d79c051
- path: output/bowtie/test.out
md5sum: a81cb18024616415a6cec3108a36fccd
@ -46,17 +46,17 @@
- bowtie
- bowtie_align
files:
- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
- path: output/bowtie/bowtie/NC_010473.1.ebwt
md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
- path: output/bowtie/bowtie/NC_010473.2.ebwt
md5sum: bfd10c5319c6a0dbc540fd789254a5dd
- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
- path: output/bowtie/bowtie/NC_010473.3.ebwt
md5sum: cd201e81724f3099131aec16ef2cc53b
- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
- path: output/bowtie/bowtie/NC_010473.4.ebwt
md5sum: bbb9d6d21ad765d135f95290204e8433
- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
- path: output/bowtie/bowtie/NC_010473.rev.1.ebwt
md5sum: 44f719c2fe42e1f35d54e798775846d1
- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
- path: output/bowtie/bowtie/NC_010473.rev.2.ebwt
md5sum: f3c398bba5158f4039334a932d79c051
- path: output/bowtie/test.out
md5sum: a23e9a2a76e949aeb3693bcfae41a615