From dd6d838cd7ac2b15dd5e56ecb1dd5b3cea63d78c Mon Sep 17 00:00:00 2001
From: SusiJo <susanne.jodoin@gmx.de>
Date: Wed, 25 May 2022 16:37:44 +0200
Subject: [PATCH] override userEmulation

---
 tests/modules/gatk4/markduplicatesspark/nextflow.config | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tests/modules/gatk4/markduplicatesspark/nextflow.config b/tests/modules/gatk4/markduplicatesspark/nextflow.config
index 8730f1c4..c66f00e6 100644
--- a/tests/modules/gatk4/markduplicatesspark/nextflow.config
+++ b/tests/modules/gatk4/markduplicatesspark/nextflow.config
@@ -3,3 +3,6 @@ process {
     publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
 
 }
+// necessary to override tests/config/nextflow.config
+docker.userEmulation = false
+