From de40c1bf54b79efb4aa2396ded7f8f457cf33c02 Mon Sep 17 00:00:00 2001 From: Lucpen Date: Mon, 2 May 2022 13:15:01 +0200 Subject: [PATCH] chore removing file from test --- tests/modules/gatk4/mergebamalignment/main.nf | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/tests/modules/gatk4/mergebamalignment/main.nf b/tests/modules/gatk4/mergebamalignment/main.nf index ebedad9b..0eb6876d 100644 --- a/tests/modules/gatk4/mergebamalignment/main.nf +++ b/tests/modules/gatk4/mergebamalignment/main.nf @@ -16,12 +16,12 @@ workflow test_gatk4_mergebamalignment { } workflow test_gatk4_mergebamalignment_stubs { - input = [ [ id:'test' ], // meta map - file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true), - file(params.test_data['sarscov2']['illumina']['test_unaligned_bam'], checkIfExists: true) + input = [ [ id:'test' ], // meta map + "test_foo.bam", + "test_bar.bam" ] - fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) - dict = file(params.test_data['sarscov2']['genome']['genome_dict'], checkIfExists: true) + fasta = "genome.fasta" + dict = "genome.fasta.dict" GATK4_MERGEBAMALIGNMENT ( input, fasta, dict ) }