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Updated dumpsoftwareversions.py to match the pipeline template (#2045)

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* Updated dumpsoftwareversions.py to match the pipeline template

* Fixed the test

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Matthieu Muffato 2022-09-26 18:45:07 +01:00 committed by GitHub
parent f0a86eaf5b
commit de7b50fdd0
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2 changed files with 7 additions and 6 deletions
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11
modules/custom/dumpsoftwareversions/templates/dumpsoftwareversions.py
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@ -58,11 +58,12 @@ versions_by_module = {}
for process, process_versions in versions_by_process.items(): for process, process_versions in versions_by_process.items():
module = process.split(":")[-1] module = process.split(":")[-1]
try: try:
assert versions_by_module[module] == process_versions, ( if versions_by_module[module] != process_versions:
"We assume that software versions are the same between all modules. " raise AssertionError(
"If you see this error-message it means you discovered an edge-case " "We assume that software versions are the same between all modules. "
"and should open an issue in nf-core/tools. " "If you see this error-message it means you discovered an edge-case "
) "and should open an issue in nf-core/tools. "
)
except KeyError: except KeyError:
versions_by_module[module] = process_versions versions_by_module[module] = process_versions

2
tests/modules/custom/dumpsoftwareversions/main.nf
View file

@ -42,7 +42,7 @@ workflow test_custom_dumpsoftwareversions {
// cases where subworkflows have a module with the same name. // cases where subworkflows have a module with the same name.
fastqc1 ( input ) fastqc1 ( input )
fastqc2 ( input ) fastqc2 ( input )
MULTIQC ( fastqc2.out.zip.collect { it[1] }, [[],[]] ) MULTIQC ( fastqc2.out.zip.collect { it[1] }, [], [], [] )
fastqc1 fastqc1
.out .out