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fix typos

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This commit is contained in:
Matthias De Smet 2022-04-28 12:53:17 +02:00
parent b92efb7abf
commit dee8ec9e91
1 changed files with 4 additions and 6 deletions
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10
subworkflows/nf-core/bam_qc_picard/main.nf
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@ -2,11 +2,9 @@
// Run QC steps on BAM/CRAM files using Picard // Run QC steps on BAM/CRAM files using Picard
// //
params.options = [:] include { PICARD_COLLECTMULTIPLEMETRICS } from '../../../modules/picard/collectmultiplemetrics/main'
include { PICARD_COLLECTWGSMETRICS } from '../../../modules/picard/collectwgsmetrics/main'
include { PICARD_COLLECTMULTIPLEMETRICS } from '../../../modules/picardcollectmultiplemetrics/main' include { PICARD_COLLECTHSMETRICS } from '../../../modules/picard/collecthsmetrics/main'
include { PICARD_COLLECTWGSMETRICS } from '../../../modules/picardcollectwgsmetrics/main'
include { PICARD_COLLECTHSMETRICS } from '../../../modules/picardcollecthsmetrics/main'
workflow BAM_QC_PICARD { workflow BAM_QC_PICARD {
take: take:
@ -18,7 +16,7 @@ workflow BAM_QC_PICARD {
main: main:
ch_versions = Channel.empty() ch_versions = Channel.empty()
PICARD_COLLECTMULTIPLEMETRICS( ch_bam_bai, ch_fasta] ) PICARD_COLLECTMULTIPLEMETRICS( ch_bam_bai, ch_fasta )
ch_versions = ch_versions.mix(PICARD_COLLECTMULTIPLEMETRICS.out.versions.first()) ch_versions = ch_versions.mix(PICARD_COLLECTMULTIPLEMETRICS.out.versions.first())
if (ch_bait_interval || ch_target_interval) { if (ch_bait_interval || ch_target_interval) {
if (ch_bait_interval.isEmpty()) { if (ch_bait_interval.isEmpty()) {