millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-10 20:23:10 +00:00
Code Issues Releases Packages Activity

fix typos

Browse source
This commit is contained in:
Matthias De Smet 2022-04-28 12:53:17 +02:00
parent b92efb7abf
commit dee8ec9e91
1 changed files with 4 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

10
subworkflows/nf-core/bam_qc_picard/main.nf
View file

@ -2,11 +2,9 @@
// Run QC steps on BAM/CRAM files using Picard
//
params.options = [:]
include { PICARD_COLLECTMULTIPLEMETRICS } from '../../../modules/picardcollectmultiplemetrics/main'
include { PICARD_COLLECTWGSMETRICS } from '../../../modules/picardcollectwgsmetrics/main'
include { PICARD_COLLECTHSMETRICS } from '../../../modules/picardcollecthsmetrics/main'
include { PICARD_COLLECTMULTIPLEMETRICS } from '../../../modules/picard/collectmultiplemetrics/main'
include { PICARD_COLLECTWGSMETRICS } from '../../../modules/picard/collectwgsmetrics/main'
include { PICARD_COLLECTHSMETRICS } from '../../../modules/picard/collecthsmetrics/main'
workflow BAM_QC_PICARD {
take:
@ -18,7 +16,7 @@ workflow BAM_QC_PICARD {
main:
ch_versions = Channel.empty()
PICARD_COLLECTMULTIPLEMETRICS( ch_bam_bai, ch_fasta] )
PICARD_COLLECTMULTIPLEMETRICS( ch_bam_bai, ch_fasta )
ch_versions = ch_versions.mix(PICARD_COLLECTMULTIPLEMETRICS.out.versions.first())
if (ch_bait_interval || ch_target_interval) {
if (ch_bait_interval.isEmpty()) {