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Add gzip for compressed output

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Matthias De Smet 2022-04-28 09:28:57 +02:00 committed by GitHub
parent db43095b1a
commit def580ddb7
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modules/vardictjava/main.nf
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@ -31,7 +31,7 @@ process VARDICTJAVA {
-N $prefix \\ -N $prefix \\
-G $reference_fasta \\ -G $reference_fasta \\
$regions_of_interest \\ $regions_of_interest \\
> ${prefix}.vcf | gzip -c > ${prefix}.vcf.gz
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":