diff --git a/software/iqtree/main.nf b/software/iqtree/main.nf index 390cd4b3..1eeb3a2a 100644 --- a/software/iqtree/main.nf +++ b/software/iqtree/main.nf @@ -5,7 +5,7 @@ params.options = [:] options = initOptions(params.options) process IQTREE { - tag "$variant_alignment" + tag "$alignment" label 'process_medium' publishDir "${params.outdir}", mode: params.publish_dir_mode, @@ -28,7 +28,7 @@ process IQTREE { script: def software = getSoftwareName(task.process) - def fconst_args = constant_sites ? '-fconst $constant_sites' : '' + def fconst_args = constant_sites ? "-fconst $constant_sites" : '' def memory = task.memory.toString().replaceAll(' ', '') """ iqtree \\ diff --git a/tests/config/test_data.config b/tests/config/test_data.config index 18f453b2..f0267fb0 100644 --- a/tests/config/test_data.config +++ b/tests/config/test_data.config @@ -1,5 +1,5 @@ // Base directory for test data -def test_data_dir = "https://github.com/nf-core/test-datasets/raw/modules/data/" +def test_data_dir = "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data" params { test_data {