diff --git a/modules/gatk4/markduplicatesspark/main.nf b/modules/gatk4/markduplicatesspark/main.nf index 01a19e5c..77e135db 100644 --- a/modules/gatk4/markduplicatesspark/main.nf +++ b/modules/gatk4/markduplicatesspark/main.nf @@ -23,7 +23,7 @@ process GATK4_MARKDUPLICATES_SPARK { script: def args = task.ext.args ?: '' prefix = task.ext.prefix ?: "${meta.id}" - def input_list = bam.collect{"--INPUT $it"}.join(' ') + def input_list = bam.collect{"--input $it"}.join(' ') def avail_mem = 3 if (!task.memory) {