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This commit is contained in:
SusiJo 2022-05-31 14:38:45 +02:00
parent 1e396d767f
commit e083bfafa0
1 changed files with 5 additions and 4 deletions
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tests/modules/gatk4/markduplicatesspark/test.yml
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@ -25,7 +25,8 @@
- path: output/gatk4/test.bam - path: output/gatk4/test.bam
md5sum: 898cb0a6616897d8ada90bab53bf0837 md5sum: 898cb0a6616897d8ada90bab53bf0837
- path: output/gatk4/test.metrics - path: output/gatk4/test.metrics
contains: '[ ## METRICS CLASS org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics contains:
"[ ## METRICS CLASS org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics
LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED SECONDARY_OR_SUPPLEMENTARY_RDS UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED SECONDARY_OR_SUPPLEMENTARY_RDS UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE
testN 0 2820 2 2 0 828 0 0.293617 3807 testN 0 2820 2 2 0 828 0 0.293617 3807
testT 0 2718 0 0 0 716 0 0.263429 4206 ]' testT 0 2718 0 0 0 716 0 0.263429 4206 ]"