From e13fbf423e2993d15fb882fc85097993688d2b19 Mon Sep 17 00:00:00 2001 From: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> Date: Sun, 22 May 2022 06:54:09 +0200 Subject: [PATCH] fix tests (again) --- tests/modules/picard/collectmultiplemetrics/test.yml | 10 ---------- tests/modules/picard/collectwgsmetrics/test.yml | 1 - 2 files changed, 11 deletions(-) diff --git a/tests/modules/picard/collectmultiplemetrics/test.yml b/tests/modules/picard/collectmultiplemetrics/test.yml index faa002b6..475778fe 100644 --- a/tests/modules/picard/collectmultiplemetrics/test.yml +++ b/tests/modules/picard/collectmultiplemetrics/test.yml @@ -5,25 +5,15 @@ - picard/collectmultiplemetrics files: - path: output/picard/test.CollectMultipleMetrics.alignment_summary_metrics - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle.pdf - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle_metrics - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.insert_size_histogram.pdf - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.insert_size_metrics - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.quality_by_cycle.pdf - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.quality_by_cycle_metrics - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.quality_distribution.pdf - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.quality_distribution_metrics - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - path: output/picard/test.CollectMultipleMetrics.read_length_histogram.pdf - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]' - name: picard collectmultiplemetrics test_picard_collectmultiplemetrics_nofasta command: nextflow run ./tests/modules/picard/collectmultiplemetrics -entry test_picard_collectmultiplemetrics_nofasta -c ./tests/config/nextflow.config -c ./tests/modules/picard/collectmultiplemetrics/nextflow.config diff --git a/tests/modules/picard/collectwgsmetrics/test.yml b/tests/modules/picard/collectwgsmetrics/test.yml index 8cfeb43a..6e99a04c 100644 --- a/tests/modules/picard/collectwgsmetrics/test.yml +++ b/tests/modules/picard/collectwgsmetrics/test.yml @@ -5,4 +5,3 @@ - picard files: - path: output/picard/test.CollectWgsMetrics.coverage_metrics - contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'