From e1951d54be3d7ca25999cf362096817a74f72277 Mon Sep 17 00:00:00 2001 From: Michael L Heuer Date: Tue, 27 Jul 2021 09:32:18 -0500 Subject: [PATCH] Update dsh-bio to 2.0.5 (#628) --- modules/dshbio/filterbed/main.nf | 6 +++--- modules/dshbio/filtergff3/main.nf | 6 +++--- modules/dshbio/splitbed/main.nf | 6 +++--- modules/dshbio/splitgff3/main.nf | 6 +++--- 4 files changed, 12 insertions(+), 12 deletions(-) diff --git a/modules/dshbio/filterbed/main.nf b/modules/dshbio/filterbed/main.nf index 92aadc41..cc1daa7d 100644 --- a/modules/dshbio/filterbed/main.nf +++ b/modules/dshbio/filterbed/main.nf @@ -11,11 +11,11 @@ process DSHBIO_FILTERBED { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" } input: diff --git a/modules/dshbio/filtergff3/main.nf b/modules/dshbio/filtergff3/main.nf index bb3a4abd..596c6b8f 100644 --- a/modules/dshbio/filtergff3/main.nf +++ b/modules/dshbio/filtergff3/main.nf @@ -11,11 +11,11 @@ process DSHBIO_FILTERGFF3 { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" } input: diff --git a/modules/dshbio/splitbed/main.nf b/modules/dshbio/splitbed/main.nf index 233b5319..75307b14 100644 --- a/modules/dshbio/splitbed/main.nf +++ b/modules/dshbio/splitbed/main.nf @@ -11,11 +11,11 @@ process DSHBIO_SPLITBED { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" } input: diff --git a/modules/dshbio/splitgff3/main.nf b/modules/dshbio/splitgff3/main.nf index 62f72241..fa434b75 100644 --- a/modules/dshbio/splitgff3/main.nf +++ b/modules/dshbio/splitgff3/main.nf @@ -11,11 +11,11 @@ process DSHBIO_SPLITGFF3 { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" } input: