seacr | Added meta file

software/seacr/callpeak/meta.yml

@@ -0,0 +1,69 @@
+name: seacr_callpeak
+description: Call peaks using SEACR on sequenced reads in bedgraph format
+keywords:
+    - peak-caller
+    - peaks
+    - bedgraph
+    - cut&tag
+    - cut&run
+    - chromatin
+    - seacr
+tools:
+    - seacr:
+        description: |
+            SEACR is intended to call peaks and enriched regions from sparse CUT&RUN 
+            or chromatin profiling data in which background is dominated by "zeroes" 
+            (i.e. regions with no read coverage).
+        homepage: https://github.com/FredHutch/SEACR
+        documentation: https://github.com/FredHutch/SEACR
+params:
+    - outdir:
+        type: string
+        description: |
+            The pipeline's output directory. By default, the module will
+            output files into `$params.outdir/<SOFTWARE>`
+    - publish_dir_mode:
+        type: string
+        description: |
+            Value for the Nextflow `publishDir` mode parameter.
+            Available: symlink, rellink, link, copy, copyNoFollow, move.
+    - enable_conda:
+        type: boolean
+        description: |
+            Run the module with Conda using the software specified
+            via the `conda` directive
+    - singularity_pull_docker_container:
+        type: boolean
+        description: |
+            Instead of directly downloading Singularity images for use with Singularity,
+            force the workflow to pull and convert Docker containers instead.
+input:
+    - meta:
+        type: map
+        description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
+    - bedgraph:
+        type: file
+        description: |
+            The target bedgraph file from which the peaks will be calculated.
+    - ctrlbedgraph:
+        type: file
+        description: |
+            Control (IgG) data bedgraph file to generate an empirical threshold for peak calling.
+output:
+    - meta:
+        type: map
+        description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
+    - bed:
+        type: file
+        description: Bed file containing the calculated peaks.
+        pattern: "*.bed"
+    - version:
+        type: file
+        description: File containing software version
+        pattern: "*.{version.txt}"
+authors:
+    - "@chris-cheshire"