diff --git a/tests/modules/gatk4/cnnscorevariants/test.yml b/tests/modules/gatk4/cnnscorevariants/test.yml
index b3ab2517..eb2e681f 100644
--- a/tests/modules/gatk4/cnnscorevariants/test.yml
+++ b/tests/modules/gatk4/cnnscorevariants/test.yml
@@ -5,6 +5,5 @@
     - gatk4
   files:
     - path: output/gatk4/test.cnn.vcf.gz
-      contains: ["CNN_1D=-11.836;END=1951 GT:DP:GQ:MIN_DP:PL"]
+      contains: ["##ALT=<ID=NON_REF,Description="]
     - path: output/gatk4/test.cnn.vcf.gz.tbi
-      md5sum: 76eda8249fa285c061e1a32da2ad95d7