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fix the version issue for motus_profile.

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This commit is contained in:
JIANHONG OU 2022-05-05 15:35:31 -04:00
parent b8efa2ae7c
commit e391c65510
1 changed files with 2 additions and 2 deletions
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4
modules/motus/profile/main.nf
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@ -39,10 +39,10 @@ process MOTUS_PROFILE {
## mOTUs version number is not available from command line.
## mOTUs save the version number in index database folder.
## mOTUs will check the database version is same version as exec version.
if [ "$refdb" == "" ]; then
if [ "$db" == "" ]; then
VERSION=\$(echo \$(motus -h 2>&1) | sed 's/^.*Version: //; s/References.*\$//')
else
VERSION=\$(grep motus $refdb/db_mOTU_versions | sed 's/motus\\t//g')
VERSION=\$(grep motus $db/db_mOTU_versions | sed 's/motus\\t//g')
fi
cat <<-END_VERSIONS > versions.yml
"${task.process}":