millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 19:18:17 +00:00
Code Issues Releases Packages Activity

fix the version issue for motus_profile.

Browse source
This commit is contained in:
JIANHONG OU 2022-05-05 15:35:31 -04:00
parent b8efa2ae7c
commit e391c65510
1 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
modules/motus/profile/main.nf
View file

@ -39,10 +39,10 @@ process MOTUS_PROFILE {
## mOTUs version number is not available from command line. ## mOTUs version number is not available from command line.
## mOTUs save the version number in index database folder. ## mOTUs save the version number in index database folder.
## mOTUs will check the database version is same version as exec version. ## mOTUs will check the database version is same version as exec version.
if [ "$refdb" == "" ]; then if [ "$db" == "" ]; then
VERSION=\$(echo \$(motus -h 2>&1) | sed 's/^.*Version: //; s/References.*\$//') VERSION=\$(echo \$(motus -h 2>&1) | sed 's/^.*Version: //; s/References.*\$//')
else else
VERSION=\$(grep motus $refdb/db_mOTU_versions | sed 's/motus\\t//g') VERSION=\$(grep motus $db/db_mOTU_versions | sed 's/motus\\t//g')
fi fi
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":