millironx/nf-core_modules
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Co-authored-by: Kevin Menden <kevin.menden@t-online.de>
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Edmund Miller 2021-02-05 09:26:45 -06:00 committed by GitHub
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@ -228,7 +228,7 @@ We also use a standardised parameter called `params.publish_dir_mode` that can b
- Test files MUST be kept as tiny as possible. - Test files MUST be kept as tiny as possible.
- Every module MUST be tested by adding a test workflow with a toy dataset in the [`tests/`](tests/software/fastqc/main.nf) test directory of the module. - Every module MUST be tested by adding a test workflow with a toy dataset in the [`tests/`](tests/software/fastqc/main.nf) directory of the module.
- Generic files from [`tests/data/`](tests/data/) MUST be reused by importing them as `file(${launchDir}/tests/data/fastq/rna/test_single_end.fastq.gz)` - Generic files from [`tests/data/`](tests/data/) MUST be reused by importing them as `file(${launchDir}/tests/data/fastq/rna/test_single_end.fastq.gz)`
@ -236,7 +236,7 @@ We also use a standardised parameter called `params.publish_dir_mode` that can b
- If the appropriate test data doesn't exist for your module then it MUST be added to [`tests/data/`](tests/data/). - If the appropriate test data doesn't exist for your module then it MUST be added to [`tests/data/`](tests/data/).
- A filter for the module must be created in [`.github/filters.yml`](.github/filters.yml). Please include any pathes specific that tool or upstream of that tool (For example bowtie build is upstream of bowtie align). - A filter for the module must be created in [`.github/filters.yml`](.github/filters.yml). Please include any paths specific for that tool or upstream of that tool (For example bowtie build is upstream of bowtie align).
#### Running Tests Locally #### Running Tests Locally