diff --git a/software/ivar/consensus/main.nf b/software/ivar/consensus/main.nf index 0cf4ffcf..f9190512 100644 --- a/software/ivar/consensus/main.nf +++ b/software/ivar/consensus/main.nf @@ -25,7 +25,7 @@ process IVAR_CONSENSUS { output: tuple val(meta), path("*.fa") , emit: fasta tuple val(meta), path("*.qual.txt"), emit: qual - tuple val(meta), path("*.mpileup") , emit: mpileup + tuple val(meta), path("*.mpileup") , optional:true, emit: mpileup path "*.version.txt" , emit: version script: