From e5b44499efcf6f7fb24874886bac60591c5d94dd Mon Sep 17 00:00:00 2001 From: "Maxime U. Garcia" Date: Thu, 21 Jul 2022 11:44:07 +0200 Subject: [PATCH] update multiqc and strelka modules version to have the same as the other modules using these ones (#1914) * update multiqc version in CUSTOM_DUMPSOFTWAREVERSIONS * update stelka version in STRELKA_GERMLINE Co-authored-by: Alexander Peltzer --- modules/custom/dumpsoftwareversions/main.nf | 6 +++--- modules/strelka/germline/main.nf | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/modules/custom/dumpsoftwareversions/main.nf b/modules/custom/dumpsoftwareversions/main.nf index 12293efc..203e485a 100644 --- a/modules/custom/dumpsoftwareversions/main.nf +++ b/modules/custom/dumpsoftwareversions/main.nf @@ -2,10 +2,10 @@ process CUSTOM_DUMPSOFTWAREVERSIONS { label 'process_low' // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container - conda (params.enable_conda ? "bioconda::multiqc=1.12" : null) + conda (params.enable_conda ? 'bioconda::multiqc=1.13a' : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/multiqc:1.12--pyhdfd78af_0' : - 'quay.io/biocontainers/multiqc:1.12--pyhdfd78af_0' }" + 'https://depot.galaxyproject.org/singularity/multiqc:1.13a--pyhdfd78af_1' : + 'quay.io/biocontainers/multiqc:1.13a--pyhdfd78af_1' }" input: path versions diff --git a/modules/strelka/germline/main.nf b/modules/strelka/germline/main.nf index 3f47d86f..02364273 100644 --- a/modules/strelka/germline/main.nf +++ b/modules/strelka/germline/main.nf @@ -4,8 +4,8 @@ process STRELKA_GERMLINE { conda (params.enable_conda ? "bioconda::strelka=2.9.10" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/strelka:2.9.10--0' : - 'quay.io/biocontainers/strelka:2.9.10--0' }" + 'https://depot.galaxyproject.org/singularity/strelka:2.9.10--h9ee0642_1' : + 'quay.io/biocontainers/strelka:2.9.10--h9ee0642_1' }" input: tuple val(meta), path(input), path(input_index), path (target_bed), path (target_bed_tbi)