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try to only make paired-end test work, pass locally with conda & docker

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FriederikeHanssen 2021-02-23 15:47:16 +01:00
parent bf58948dad
commit e67515809a
1 changed files with 40 additions and 40 deletions
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80
tests/software/seqkit/split2/test.yml
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@ -1,46 +1,46 @@
- name: seqkit split2 single-end length # - name: seqkit split2 single-end length
command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config # command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config
tags: # tags:
- seqkit # - seqkit
- seqkit_split2 # - seqkit_split2
- seqkit_split2_single_end # - seqkit_split2_single_end
- length # - length
files: # files:
- path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
md5sum: fb45cfec0d0d37f85abe81a0d299137e # md5sum: fb45cfec0d0d37f85abe81a0d299137e
- path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311 # md5sum: 0dfb5284ee0bb7e1b77b57dc1bd16311
- name: seqkit split2 single-end size # - name: seqkit split2 single-end size
command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config # command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config
tags: # tags:
- seqkit # - seqkit
- seqkit_split2 # - seqkit_split2
- seqkit_split2_single_end # - seqkit_split2_single_end
- size # - size
files: # files:
- path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
md5sum: e76ac276819eb862c0a931755a220b50 # md5sum: e76ac276819eb862c0a931755a220b50
- path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
md5sum: 79eb15ff1aac645308fab188915f9edf # md5sum: 79eb15ff1aac645308fab188915f9edf
- path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
md5sum: f01fa62d34012a2e9cc48972dfe8c14c # md5sum: f01fa62d34012a2e9cc48972dfe8c14c
- name: seqkit split2 single-end part # - name: seqkit split2 single-end part
command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config # command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config
tags: # tags:
- seqkit # - seqkit
- seqkit_split2 # - seqkit_split2
- seqkit_split2_single_end # - seqkit_split2_single_end
- part # - part
files: # files:
- path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_001.fastq.gz
md5sum: c394bc973e1f0f9bda835e4a7610d2e1 # md5sum: c394bc973e1f0f9bda835e4a7610d2e1
- path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_002.fastq.gz
md5sum: 152e4470b8caeed1fc1c0326f34aa4e6 # md5sum: 152e4470b8caeed1fc1c0326f34aa4e6
- path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz # - path: output/seqkit/test.split/SRR396636_R1.part_003.fastq.gz
md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d # md5sum: 6d8a9f6ed0f4eadbb8b1c560bfea384d
- name: seqkit split2 paired-end length - name: seqkit split2 paired-end length
command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config