From e71b3eaaa544d026d47b97a90f72c662817c8117 Mon Sep 17 00:00:00 2001
From: drpatelh <drhpatel@gmail.com>
Date: Wed, 3 Feb 2021 17:48:17 +0000
Subject: [PATCH] Rename workflows

---
 tests/software/bowtie/align/main.nf   | 4 ++--
 tests/software/bowtie/align/test.yml  | 4 ++--
 tests/software/bowtie2/align/test.yml | 2 ++
 3 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/tests/software/bowtie/align/main.nf b/tests/software/bowtie/align/main.nf
index df12f79e..d3dfa500 100644
--- a/tests/software/bowtie/align/main.nf
+++ b/tests/software/bowtie/align/main.nf
@@ -5,7 +5,7 @@ nextflow.enable.dsl = 2
 include { BOWTIE_BUILD } from '../../../../software/bowtie/build/main.nf' addParams( options: [:] )
 include { BOWTIE_ALIGN } from '../../../../software/bowtie/align/main.nf' addParams( options: [:] )
 
-workflow test_bowtie_alignment_single_end {
+workflow test_bowtie_align_single_end {
 
     def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
     BOWTIE_BUILD ( fasta )
@@ -16,7 +16,7 @@ workflow test_bowtie_alignment_single_end {
     BOWTIE_ALIGN ( input, BOWTIE_BUILD.out.index )
 }
 
-workflow test_bowtie_alignment_paired_end {
+workflow test_bowtie_align_paired_end {
     
     def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
     BOWTIE_BUILD ( fasta )
diff --git a/tests/software/bowtie/align/test.yml b/tests/software/bowtie/align/test.yml
index 4c12905f..a941b233 100644
--- a/tests/software/bowtie/align/test.yml
+++ b/tests/software/bowtie/align/test.yml
@@ -1,5 +1,5 @@
 - name: bowtie align single-end
-  command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config
+  command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
   tags:
     - bowtie
     - bowtie_align
@@ -23,7 +23,7 @@
       should_exist: true
 
 - name: bowtie align paired-end
-  command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config
+  command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
   tags:
     - bowtie
     - bowtie_align
diff --git a/tests/software/bowtie2/align/test.yml b/tests/software/bowtie2/align/test.yml
index 52c51f3d..49266c9d 100644
--- a/tests/software/bowtie2/align/test.yml
+++ b/tests/software/bowtie2/align/test.yml
@@ -2,6 +2,7 @@
   command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config
   tags:
     - bowtie2
+    - bowtie2_align
     - bowtie2_align_single_end
   files:
     - path: output/bowtie2/bowtie2/NC_010473.1.bt2
@@ -25,6 +26,7 @@
   command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
   tags:
     - bowtie2
+    - bowtie2_align
     - bowtie2_align_paired_end
   files:
     - path: output/bowtie2/bowtie2/NC_010473.1.bt2