millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-13 05:13:09 +00:00
Code Issues Releases Packages Activity

Update pytest tag name for fastqc (#501)

Browse source 
Running pytest with `--tag fastqc_single_end` does not work (it runs zero tests), as it appears that the tag name was changed to `fastqc` during the transition from underscores to slashes.
This commit is contained in:
Charles Plessy 2021-05-19 16:30:22 +09:00 committed by GitHub
parent 0bbd7acfc4
commit e84eaa22f3
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
README.md
View file

@ -362,21 +362,21 @@ Please follow the steps below to run the tests locally:
```console
cd /path/to/git/clone/of/nf-core/modules/
PROFILE=docker pytest --tag fastqc_single_end --symlink --keep-workflow-wd
PROFILE=docker pytest --tag fastqc --symlink --keep-workflow-wd
```
- Typical command with Singularity:
```console
cd /path/to/git/clone/of/nf-core/modules/
TMPDIR=~ PROFILE=singularity pytest --tag fastqc_single_end --symlink --keep-workflow-wd
TMPDIR=~ PROFILE=singularity pytest --tag fastqc --symlink --keep-workflow-wd
```
- Typical command with Conda:
```console
cd /path/to/git/clone/of/nf-core/modules/
PROFILE=conda pytest --tag fastqc_single_end --symlink --keep-workflow-wd
PROFILE=conda pytest --tag fastqc --symlink --keep-workflow-wd
```
- See [docs on running pytest-workflow](https://pytest-workflow.readthedocs.io/en/stable/#running-pytest-workflow) for more info.