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polish python script in view

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Ramprasad Neethiraj 2022-05-05 17:28:49 +02:00
parent 26311aba2a
commit ea1f5daf44
1 changed files with 7 additions and 9 deletions
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6
modules/cnvpytor/view/main.nf
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@ -29,12 +29,10 @@ process CNVPYTOR_VIEW {
python3 <<CODE python3 <<CODE
import cnvpytor,os import cnvpytor,os
from pathlib import Path from pathlib import Path
pytor_files = Path.cwd().glob("*.pytor") pytor_file = Path("$pytor")
binsizes = "${bins}".split(" ") binsizes = "${bins}".split(" ")
for pytor_file in pytor_files:
for binsize in binsizes: for binsize in binsizes:
file_list = [str(pytor_file)] app = cnvpytor.Viewer(["$pytor"], params={} )
app = cnvpytor.Viewer(file_list, params={} )
outputfile = "{}_{}.{}".format(pytor_file.stem,binsize.strip(),"${output_suffix}") outputfile = "{}_{}.{}".format(pytor_file.stem,binsize.strip(),"${output_suffix}")
app.print_filename = outputfile app.print_filename = outputfile
app.bin_size = int(binsize) app.bin_size = int(binsize)