millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

polish python script in view

Browse source
This commit is contained in:
Ramprasad Neethiraj 2022-05-05 17:28:49 +02:00
parent 26311aba2a
commit ea1f5daf44
1 changed files with 7 additions and 9 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

16
modules/cnvpytor/view/main.nf
View file

@ -29,16 +29,14 @@ process CNVPYTOR_VIEW {
python3 <<CODE python3 <<CODE
import cnvpytor,os import cnvpytor,os
from pathlib import Path from pathlib import Path
pytor_files = Path.cwd().glob("*.pytor") pytor_file = Path("$pytor")
binsizes = "${bins}".split(" ") binsizes = "${bins}".split(" ")
for pytor_file in pytor_files: for binsize in binsizes:
for binsize in binsizes: app = cnvpytor.Viewer(["$pytor"], params={} )
file_list = [str(pytor_file)] outputfile = "{}_{}.{}".format(pytor_file.stem,binsize.strip(),"${output_suffix}")
app = cnvpytor.Viewer(file_list, params={} ) app.print_filename = outputfile
outputfile = "{}_{}.{}".format(pytor_file.stem,binsize.strip(),"${output_suffix}") app.bin_size = int(binsize)
app.print_filename = outputfile app.print_calls_file()
app.bin_size = int(binsize)
app.print_calls_file()
CODE CODE
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml