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Deepvariant - Update main.nf (#2110)

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Update main.nf

simplify deepvariant container call
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Maxime U. Garcia 2022-09-27 15:34:10 +02:00 committed by GitHub
parent daab0a77dd
commit eb15df8036
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1 changed files with 1 additions and 3 deletions
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modules/deepvariant/main.nf
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@ -7,9 +7,7 @@ process DEEPVARIANT {
exit 1, "Conda environments cannot be used when using the DeepVariant tool. Please use docker or singularity containers."
}
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'google/deepvariant:1.3.0' :
'google/deepvariant:1.3.0' }"
container 'google/deepvariant:1.3.0'
input:
tuple val(meta), path(input), path(index), path(intervals)