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Deepvariant - Update main.nf (#2110)

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Update main.nf

simplify deepvariant container call
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Maxime U. Garcia 2022-09-27 15:34:10 +02:00 committed by GitHub
parent daab0a77dd
commit eb15df8036
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1 changed files with 1 additions and 3 deletions
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modules/deepvariant/main.nf
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@ -7,9 +7,7 @@ process DEEPVARIANT {
exit 1, "Conda environments cannot be used when using the DeepVariant tool. Please use docker or singularity containers." exit 1, "Conda environments cannot be used when using the DeepVariant tool. Please use docker or singularity containers."
} }
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container 'google/deepvariant:1.3.0'
'google/deepvariant:1.3.0' :
'google/deepvariant:1.3.0' }"
input: input:
tuple val(meta), path(input), path(index), path(intervals) tuple val(meta), path(input), path(index), path(intervals)