millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-21 18:58:16 +00:00
Code Issues Releases Packages Activity

Deepvariant - Update main.nf (#2110)

Browse source 
Update main.nf

simplify deepvariant container call
This commit is contained in:
Maxime U. Garcia 2022-09-27 15:34:10 +02:00 committed by GitHub
parent daab0a77dd
commit eb15df8036
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
modules/deepvariant/main.nf
View file

@ -7,9 +7,7 @@ process DEEPVARIANT {
exit 1, "Conda environments cannot be used when using the DeepVariant tool. Please use docker or singularity containers." exit 1, "Conda environments cannot be used when using the DeepVariant tool. Please use docker or singularity containers."
} }
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container 'google/deepvariant:1.3.0'
'google/deepvariant:1.3.0' :
'google/deepvariant:1.3.0' }"
input: input:
tuple val(meta), path(input), path(index), path(intervals) tuple val(meta), path(input), path(index), path(intervals)