From 28fb5e8cbd41dadbed4809be5bb4a8d8ad2db41c Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Wed, 17 Feb 2021 01:34:50 +0100 Subject: [PATCH] fix: update checksum or filename --- tests/software/TOOL/SUBTOOL/test.yml | 2 +- tests/software/bwa/mem/test.yml | 4 ++-- tests/software/bwamem2/mem/test.yml | 4 ++-- tests/software/fastp/test.yml | 6 +++--- tests/software/pangolin/test.yml | 2 +- tests/software/samtools/sort/test.yml | 2 +- tests/software/star/align/test.yml | 8 ++++---- tests/software/star/genomegenerate/test.yml | 2 +- tests/software/stringtie/test.yml | 8 ++++---- 9 files changed, 19 insertions(+), 19 deletions(-) diff --git a/tests/software/TOOL/SUBTOOL/test.yml b/tests/software/TOOL/SUBTOOL/test.yml index 5db8b7c4..35d9b3c7 100644 --- a/tests/software/TOOL/SUBTOOL/test.yml +++ b/tests/software/TOOL/SUBTOOL/test.yml @@ -5,4 +5,4 @@ - tool_subtool files: - path: output/tool/test.bam - md5sum: a41bfadacd2eeef1d31e05c135cc4f4e \ No newline at end of file + md5sum: e667c7caad0bc4b7ac383fd023c654fc \ No newline at end of file diff --git a/tests/software/bwa/mem/test.yml b/tests/software/bwa/mem/test.yml index b4c2f4f8..457fe822 100644 --- a/tests/software/bwa/mem/test.yml +++ b/tests/software/bwa/mem/test.yml @@ -6,7 +6,7 @@ - bwa_mem_single_end files: - path: output/bwa/test.bam - md5sum: 52e81e5bd523d0b27fe533b21a0d80f5 + md5sum: 2bea94a4458cd1216214874b11c2e394 - name: bwa mem paired-end command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config @@ -16,4 +16,4 @@ - bwa_mem_paired_end files: - path: output/bwa/test.bam - md5sum: 86d82fdb68ed384c656cfc62a253052f + md5sum: 2d952be81c7d2856712391b5d8556039 diff --git a/tests/software/bwamem2/mem/test.yml b/tests/software/bwamem2/mem/test.yml index 6eeb6b14..7d65f66b 100644 --- a/tests/software/bwamem2/mem/test.yml +++ b/tests/software/bwamem2/mem/test.yml @@ -6,7 +6,7 @@ - bwamem2_mem_single_end files: - path: output/bwamem2/test.bam - md5sum: 354acd3b7033a2d4ee69452df18c0a4d + md5sum: b8fceee111b3e23372c95ed765ac4401 - name: bwamem2 mem paired-end command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config @@ -16,4 +16,4 @@ - bwamem2_mem_paired_end files: - path: output/bwamem2/test.bam - md5sum: 26187528a7bde13a2a9e9dd549b9bcd0 + md5sum: 4b05c7e1b28e0835c647e890854897e4 diff --git a/tests/software/fastp/test.yml b/tests/software/fastp/test.yml index b46c8dd7..3f631f25 100644 --- a/tests/software/fastp/test.yml +++ b/tests/software/fastp/test.yml @@ -5,9 +5,9 @@ - fastp_single_end files: - path: ./output/fastp/test.fastp.json - md5sum: b81d53bfa5c1553bed89f6475edcf437 + md5sum: 8740a96898a850a3c2ce0081d9a259fb - path: ./output/fastp/test.trim.fastq.gz - md5sum: 2f5516df477b123e3f78adb67effa3bc + md5sum: 63fea84c6907d2716aeb53fe890b288d - path: ./output/fastp/test.fastp.log - path: ./output/fastp/test.fastp.html @@ -19,7 +19,7 @@ files: - path: ./output/fastp/test.fastp.html - path: ./output/fastp/test.fastp.json - md5sum: 40db7fcbed478b0a96a1c5c1bb5f737b + md5sum: 7afba66526b1dd4cd3b1012809ba0327 - path: ./output/fastp/test.fastp.log - path: ./output/fastp/test_1.trim.fastq.gz md5sum: c8844c05194b50ae368e6825e997aa7f diff --git a/tests/software/pangolin/test.yml b/tests/software/pangolin/test.yml index 198ede93..44074f09 100644 --- a/tests/software/pangolin/test.yml +++ b/tests/software/pangolin/test.yml @@ -4,4 +4,4 @@ - pangolin files: - path: ./output/pangolin/test.pangolin.csv - md5sum: 097669de1843e27f4529d6db8bbed97b + md5sum: 43edd267815f6408b66961a0abf9ddd6 diff --git a/tests/software/samtools/sort/test.yml b/tests/software/samtools/sort/test.yml index 3b34ef25..a7f4110e 100644 --- a/tests/software/samtools/sort/test.yml +++ b/tests/software/samtools/sort/test.yml @@ -5,4 +5,4 @@ - samtools_sort files: - path: output/samtools/test.bam - md5sum: a41bfadacd2eeef1d31e05c135cc4f4e \ No newline at end of file + md5sum: e667c7caad0bc4b7ac383fd023c654fc \ No newline at end of file diff --git a/tests/software/star/align/test.yml b/tests/software/star/align/test.yml index 7288aa14..8e0733a6 100644 --- a/tests/software/star/align/test.yml +++ b/tests/software/star/align/test.yml @@ -22,7 +22,7 @@ - path: output/star/star/exonInfo.tab md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343 - path: output/star/star/genomeParameters.txt - md5sum: ed47b8b034cae2fefcdb39321aea47cd + md5sum: 05e1041cbfb7f81686e17bc80b3ddcea - path: output/star/star/sjdbInfo.txt md5sum: 1082ab459363b3f2f7aabcef0979c1ed - path: output/star/star/sjdbList.fromGTF.out.tab @@ -32,7 +32,7 @@ - path: output/star/star/transcriptInfo.tab md5sum: 8fbe69abbbef4f89da3854873984dbac - path: output/star/test.Aligned.out.bam - md5sum: d7f59c1728482e76a18e3f6eb9c66c25 + md5sum: b7f113f12ff62e09d16fa0ace290d03e - path: output/star/test.SJ.out.tab md5sum: d41d8cd98f00b204e9800998ecf8427e @@ -60,7 +60,7 @@ - path: output/star/star/exonInfo.tab md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343 - path: output/star/star/genomeParameters.txt - md5sum: ed47b8b034cae2fefcdb39321aea47cd + md5sum: 05e1041cbfb7f81686e17bc80b3ddcea - path: output/star/star/sjdbInfo.txt md5sum: 1082ab459363b3f2f7aabcef0979c1ed - path: output/star/star/sjdbList.fromGTF.out.tab @@ -70,6 +70,6 @@ - path: output/star/star/transcriptInfo.tab md5sum: 8fbe69abbbef4f89da3854873984dbac - path: output/star/test.Aligned.out.bam - md5sum: 5c52bcaa15e86914ad6b895638235166 + md5sum: a1f92e8dbeb954b6b8d3d7cc6b9814fb - path: output/star/test.SJ.out.tab md5sum: d41d8cd98f00b204e9800998ecf8427e diff --git a/tests/software/star/genomegenerate/test.yml b/tests/software/star/genomegenerate/test.yml index 27d21ad5..1f238cb9 100644 --- a/tests/software/star/genomegenerate/test.yml +++ b/tests/software/star/genomegenerate/test.yml @@ -21,7 +21,7 @@ - path: output/star/star/exonInfo.tab md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343 - path: output/star/star/genomeParameters.txt - md5sum: ed47b8b034cae2fefcdb39321aea47cd + md5sum: 05e1041cbfb7f81686e17bc80b3ddcea - path: output/star/star/sjdbInfo.txt md5sum: 1082ab459363b3f2f7aabcef0979c1ed - path: output/star/star/sjdbList.fromGTF.out.tab diff --git a/tests/software/stringtie/test.yml b/tests/software/stringtie/test.yml index f180d0c4..4aa75795 100644 --- a/tests/software/stringtie/test.yml +++ b/tests/software/stringtie/test.yml @@ -3,10 +3,10 @@ tags: - stringtie files: - - path: output/test_stringtie_forward/test.gene_abundance.txt + - path: output/test_stringtie_forward/test.gene.abundance.txt md5sum: cea2e346f4e8137da13265b9b0a4c573 - path: output/test_stringtie_forward/test.transcripts.gtf - md5sum: f1b5baa8d94f86e499556a4ec419a75a + md5sum: 80a4155b459a124eac64b52cde7e8ad1 - path: output/test_stringtie_forward/test.coverage.gtf md5sum: d41d8cd98f00b204e9800998ecf8427e - path: output/test_stringtie_forward/test.ballgown/e_data.ctab @@ -25,10 +25,10 @@ tags: - stringtie files: - - path: output/test_stringtie_reverse/test.gene_abundance.txt + - path: output/test_stringtie_reverse/test.gene.abundance.txt md5sum: cea2e346f4e8137da13265b9b0a4c573 - path: output/test_stringtie_reverse/test.transcripts.gtf - md5sum: cb0367e5f98f19fcc2043d248deb513c + md5sum: a69eabfc201112167f0844ffb80005c5 - path: output/test_stringtie_reverse/test.coverage.gtf md5sum: d41d8cd98f00b204e9800998ecf8427e - path: output/test_stringtie_reverse/test.ballgown/e_data.ctab