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update arriba tests

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This commit is contained in:
Annick Renevey 2022-05-09 14:55:18 +02:00
parent bf91f9dd9b
commit eed874ace7
2 changed files with 5 additions and 4 deletions
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4
tests/modules/arriba/main.nf
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@ -20,7 +20,7 @@ workflow test_arriba_single_end {
STAR_GENOMEGENERATE ( fasta, gtf ) STAR_GENOMEGENERATE ( fasta, gtf )
STAR_ALIGN ( input, STAR_GENOMEGENERATE.out.index, gtf, star_ignore_sjdbgtf, seq_platform, seq_center ) STAR_ALIGN ( input, STAR_GENOMEGENERATE.out.index, gtf, star_ignore_sjdbgtf, seq_platform, seq_center )
ARRIBA ( STAR_ALIGN.out.bam, fasta, gtf ) ARRIBA ( STAR_ALIGN.out.bam, fasta, gtf , [], [], [], [], [])
} }
workflow test_arriba_paired_end { workflow test_arriba_paired_end {
@ -38,5 +38,5 @@ workflow test_arriba_paired_end {
STAR_GENOMEGENERATE ( fasta, gtf ) STAR_GENOMEGENERATE ( fasta, gtf )
STAR_ALIGN ( input, STAR_GENOMEGENERATE.out.index, gtf, star_ignore_sjdbgtf, seq_platform, seq_center ) STAR_ALIGN ( input, STAR_GENOMEGENERATE.out.index, gtf, star_ignore_sjdbgtf, seq_platform, seq_center )
ARRIBA ( STAR_ALIGN.out.bam, fasta, gtf ) ARRIBA ( STAR_ALIGN.out.bam, fasta, gtf, [], [], [], [], [])
} }

5
tests/modules/arriba/test.yml
View file

@ -13,7 +13,7 @@
- path: output/star/star/SA - path: output/star/star/SA
md5sum: 8c3edc46697b72c9e92440d4cf43506c md5sum: 8c3edc46697b72c9e92440d4cf43506c
- path: output/star/star/SAindex - path: output/star/star/SAindex
md5sum: 9f085c626553b1c52f2827421972ac10 md5sum: 2a0c675d8b91d8e5e8c1826d3500482e
- path: output/star/star/chrLength.txt - path: output/star/star/chrLength.txt
md5sum: c81f40f27e72606d7d07097c1d56a5b5 md5sum: c81f40f27e72606d7d07097c1d56a5b5
- path: output/star/star/chrName.txt - path: output/star/star/chrName.txt
@ -29,7 +29,7 @@
- path: output/star/star/geneInfo.tab - path: output/star/star/geneInfo.tab
md5sum: 8b608537307443ffaee4927d2b428805 md5sum: 8b608537307443ffaee4927d2b428805
- path: output/star/star/genomeParameters.txt - path: output/star/star/genomeParameters.txt
md5sum: 9e42067b1ec70b773257529230dd7b3a md5sum: 3097677f4d8b2cb66770b9e55d343a7f
- path: output/star/star/sjdbInfo.txt - path: output/star/star/sjdbInfo.txt
md5sum: 5690ea9d9f09f7ff85b7fd47bd234903 md5sum: 5690ea9d9f09f7ff85b7fd47bd234903
- path: output/star/star/sjdbList.fromGTF.out.tab - path: output/star/star/sjdbList.fromGTF.out.tab
@ -39,6 +39,7 @@
- path: output/star/star/transcriptInfo.tab - path: output/star/star/transcriptInfo.tab
md5sum: 0c3a5adb49d15e5feff81db8e29f2e36 md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
- path: output/star/test.Aligned.out.bam - path: output/star/test.Aligned.out.bam
md5sum: b9f5e2f6a624b64c300fe25dc3ac801f
- path: output/star/test.Log.final.out - path: output/star/test.Log.final.out
- path: output/star/test.Log.out - path: output/star/test.Log.out
- path: output/star/test.Log.progress.out - path: output/star/test.Log.progress.out