diff --git a/modules/rtgtools/vcfeval/meta.yml b/modules/rtgtools/vcfeval/meta.yml index e568852c..587c2d3e 100644 --- a/modules/rtgtools/vcfeval/meta.yml +++ b/modules/rtgtools/vcfeval/meta.yml @@ -58,62 +58,18 @@ output: type: file description: File containing software versions pattern: "versions.yml" - - done: + - logging: type: file - description: A file containing the message on succesful completion - pattern: "done" - - progress: + description: Files containing logging from vcfeval + pattern: "*{done,progress,.log}" + - vcf: type: file - description: A file containing the simplified logging of the process - pattern: "progress" - - vcfeval_log: + description: VCF files containing the false negatives, false positives and true positives with their index files + pattern: "*.vcf{.gz,.gz.tbi}" + - roc: type: file - description: A file containing the extended logging of the process - pattern: "*.log" - - false_negatives_vcf: - type: file - description: A VCF file containing the false negative variants - pattern: "fn.vcf.gz" - - false_negatives_index: - type: file - description: The index file for the false negatives' VCF file - pattern: "fn.vcf.gz.tbi" - - false_positive_vcf: - type: file - description: A VCF file containing the false positive variants - pattern: "fp.vcf.gz" - - false_positives_index: - type: file - description: The index file for the false positives' VCF file - pattern: "fp.vcf.gz.tbi" - - true_positive_vcf: - type: file - description: A VCF file containing the true positive variants - pattern: "tp.vcf.gz" - - true_positives_index: - type: file - description: The index file for the true positives' VCF file - pattern: "tp.vcf.gz.tbi" - - true_positive_baseline_vcf: - type: file - description: A VCF file containing the true positive baseline variants - pattern: "tp-baseline.vcf.gz" - - true_positives_baseline_index: - type: file - description: The index file for the baseline true positives' VCF file - pattern: "tp-baseline.vcf.gz.tbi" - - non_snp_roc: - type: file - description: A TSV file containing the ROC data for the non-SNP variants - pattern: "non_snp_roc.tsv.gz" - - snp_roc: - type: file - description: A TSV file containing the ROC data for the SNP variants - pattern: "snp_roc.tsv.gz" - - weighted_roc: - type: file - description: A TSV file containing the weighted ROC data - pattern: "weighted_roc.tsv.gz" + description: TSV files containing ROC data for the evaluated variants + pattern: "*.tsv.gz" - summary: type: file description: A TXT file containing the summary of the evaluation