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gatk4 version update to 4.2.6.1

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Rike 2022-06-09 14:54:19 +02:00
parent 6e732f5499
commit ef5b0dd977
1 changed files with 3 additions and 3 deletions
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6
modules/gatk4/markduplicatesspark/main.nf
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@ -2,10 +2,10 @@ process GATK4_MARKDUPLICATES_SPARK {
tag "$meta.id" tag "$meta.id"
label 'process_high' label 'process_high'
conda (params.enable_conda ? "bioconda::gatk4=4.2.3.0 conda-forge::openjdk=8.0.312" : null) conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1 conda-forge::openjdk=8.0.312" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/gatk4:4.2.3.0--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/gatk4:4.2.6.1--hdfd78af_0':
'broadinstitute/gatk:4.2.3.0' }" 'quay.io/biocontainers/gatk4:4.2.6.1--hdfd78af_0' }"
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)