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Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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@ -34,7 +34,6 @@ process GATK4_MARKDUPLICATES_SPARK {
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avail_mem = task.memory.giga
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}
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"""
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gatk --java-options "-Xmx${avail_mem}g" MarkDuplicatesSpark \\
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$input_list \\
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--output $prefix \\
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