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Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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SusiJo 2022-06-02 16:23:18 +02:00 • committed by GitHub
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modules/gatk4/markduplicatesspark/main.nf
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@ -34,7 +34,6 @@ process GATK4_MARKDUPLICATES_SPARK {
avail_mem = task.memory.giga avail_mem = task.memory.giga
} }
""" """
gatk --java-options "-Xmx${avail_mem}g" MarkDuplicatesSpark \\ gatk --java-options "-Xmx${avail_mem}g" MarkDuplicatesSpark \\
$input_list \\ $input_list \\
--output $prefix \\ --output $prefix \\