diff --git a/software/fastqc/test/output/test_R1_fastqc.html b/software/fastqc/test/output/test_R1_fastqc.html deleted file mode 100644 index f81fd4f4..00000000 --- a/software/fastqc/test/output/test_R1_fastqc.html +++ /dev/null @@ -1,187 +0,0 @@ -test_R1.fastq.gz FastQC Report
FastQCFastQC Report
Tue 17 Mar 2020
test_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametest_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10000
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT230.22999999999999998No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT160.16No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT150.15No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)
\ No newline at end of file diff --git a/software/fastqc/test/output/test_R1_fastqc.zip b/software/fastqc/test/output/test_R1_fastqc.zip deleted file mode 100644 index 05358336..00000000 Binary files a/software/fastqc/test/output/test_R1_fastqc.zip and /dev/null differ diff --git a/software/fastqc/test/output/test_R1_val_1_fastqc.html b/software/fastqc/test/output/test_R1_val_1_fastqc.html deleted file mode 100644 index 45c60031..00000000 --- a/software/fastqc/test/output/test_R1_val_1_fastqc.html +++ /dev/null @@ -1,187 +0,0 @@ -test_R1_val_1.fq.gz FastQC Report
FastQCFastQC Report
Tue 17 Mar 2020
test_R1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametest_R1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9979
Sequences flagged as poor quality0
Sequence length20-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)
\ No newline at end of file diff --git a/software/fastqc/test/output/test_R1_val_1_fastqc.zip b/software/fastqc/test/output/test_R1_val_1_fastqc.zip deleted file mode 100644 index f59827d2..00000000 Binary files a/software/fastqc/test/output/test_R1_val_1_fastqc.zip and /dev/null differ diff --git a/software/fastqc/test/output/test_R2_fastqc.html b/software/fastqc/test/output/test_R2_fastqc.html deleted file mode 100644 index ff3435d8..00000000 --- a/software/fastqc/test/output/test_R2_fastqc.html +++ /dev/null @@ -1,187 +0,0 @@ -test_R2.fastq.gz FastQC Report
FastQCFastQC Report
Tue 17 Mar 2020
test_R2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametest_R2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10000
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190.19No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)
\ No newline at end of file diff --git a/software/fastqc/test/output/test_R2_fastqc.zip b/software/fastqc/test/output/test_R2_fastqc.zip deleted file mode 100644 index dcfa2eab..00000000 Binary files a/software/fastqc/test/output/test_R2_fastqc.zip and /dev/null differ diff --git a/software/fastqc/test/output/test_R2_val_2_fastqc.html b/software/fastqc/test/output/test_R2_val_2_fastqc.html deleted file mode 100644 index 1dc83b81..00000000 --- a/software/fastqc/test/output/test_R2_val_2_fastqc.html +++ /dev/null @@ -1,187 +0,0 @@ -test_R2_val_2.fq.gz FastQC Report
FastQCFastQC Report
Tue 17 Mar 2020
test_R2_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametest_R2_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9979
Sequences flagged as poor quality0
Sequence length20-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)
\ No newline at end of file diff --git a/software/fastqc/test/output/test_R2_val_2_fastqc.zip b/software/fastqc/test/output/test_R2_val_2_fastqc.zip deleted file mode 100644 index d6eb7389..00000000 Binary files a/software/fastqc/test/output/test_R2_val_2_fastqc.zip and /dev/null differ