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ci: Add nextflow.log

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Edmund Miller 2021-01-22 11:49:24 -06:00
parent 73bd2d499e
commit f05134e855
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19 changed files with 19 additions and 0 deletions
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1
.github/workflows/bowtie_align.yml vendored
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@ -47,5 +47,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/bowtie_index.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/bwa_index.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/bwa_mem.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/fastqc.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/gffread.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/multiqc.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/picard_collectmultiplemetrics.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/picard_markduplicates.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/picard_mergesamfiles.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/preseq_lcextrap.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/samtools_flagstat.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/samtools_idxstats.yml vendored
View file

@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/samtools_index.yml vendored
View file

@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/samtools_sort.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/samtools_stats.yml vendored
View file

@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/stringtie.yml vendored
View file

@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/trimgalore.yml vendored
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@ -45,5 +45,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err

1
.github/workflows/ucsc_bedgraphtobigwig.yml vendored
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@ -44,5 +44,6 @@ jobs:
with: with:
name: logs name: logs
path: | path: |
/tmp/pytest_workflow_*/*/.nextflow.log
/tmp/pytest_workflow_*/*/log.out /tmp/pytest_workflow_*/*/log.out
/tmp/pytest_workflow_*/*/log.err /tmp/pytest_workflow_*/*/log.err