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Update pytests

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This commit is contained in:
Mahesh Binzer-Panchal 2022-05-09 13:00:10 +00:00
parent 57fee2b3d6
commit f0f414d519
2 changed files with 24 additions and 4 deletions
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13
tests/modules/meryl/unionsum/main.nf
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@ -5,7 +5,18 @@ nextflow.enable.dsl = 2
include { MERYL_COUNT } from '../../../../modules/meryl/count/main.nf' include { MERYL_COUNT } from '../../../../modules/meryl/count/main.nf'
include { MERYL_UNIONSUM } from '../../../../modules/meryl/unionsum/main.nf' include { MERYL_UNIONSUM } from '../../../../modules/meryl/unionsum/main.nf'
workflow test_meryl_unionsum { workflow test_meryl_unionsum_single_end {
input = [
[ id:'test', single_end: true ], // meta map
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true)
]
MERYL_COUNT ( input )
MERYL_UNIONSUM ( MERYL_COUNT.out.meryl_db )
}
workflow test_meryl_unionsum_paired_end {
input = [ input = [
[ id:'test', single_end: false ], // meta map [ id:'test', single_end: false ], // meta map

15
tests/modules/meryl/unionsum/test.yml
View file

@ -1,8 +1,17 @@
- name: meryl unionsum test_meryl_unionsum - name: meryl unionsum test_meryl_unionsum_single_end
command: nextflow run tests/modules/meryl/unionsum -entry test_meryl_unionsum -c tests/config/nextflow.config command: nextflow run tests/modules/meryl/unionsum -entry test_meryl_unionsum_single_end -c tests/config/nextflow.config
tags: tags:
- meryl - meryl
- meryl/unionsum - meryl/unionsum
files: files:
- path: output/meryl/versions.yml - path: output/meryl/versions.yml
md5sum: c864aa98f55b9ec7fa1fb2716ec736dd md5sum: 7de859c6d3a29d72f6c9c976609d0913
- name: meryl unionsum test_meryl_unionsum_paired_end
command: nextflow run tests/modules/meryl/unionsum -entry test_meryl_unionsum_paired_end -c tests/config/nextflow.config
tags:
- meryl
- meryl/unionsum
files:
- path: output/meryl/versions.yml
md5sum: a16decdec014ccb9bdab69a4a1d30818