diff --git a/tests/software/bwa/mem/test.yml b/tests/software/bwa/mem/test.yml
index 9ce4ce50..decf2e44 100644
--- a/tests/software/bwa/mem/test.yml
+++ b/tests/software/bwa/mem/test.yml
@@ -5,7 +5,7 @@
     - bwa_mem
     - bwa_mem_single_end
   files:
-    - path: output/test_single_end/test.bam
+    - path: output/bwa/test.bam
       md5sum: 3ee21210bac387e0335008146e4728bc
 
 - name: bwa mem paired-end
@@ -15,5 +15,5 @@
     - bwa_mem
     - bwa_mem_paired_end
   files:
-    - path: output/test_paired_end/test.bam
+    - path: output/bwa/test.bam
       md5sum: 510d8acc6448c07cdacce8e64ec0904c