diff --git a/modules/cnvkit/batch/meta.yml b/modules/cnvkit/batch/meta.yml index 03277e33..2cd675c7 100644 --- a/modules/cnvkit/batch/meta.yml +++ b/modules/cnvkit/batch/meta.yml @@ -11,27 +11,6 @@ tools: homepage: https://cnvkit.readthedocs.io/en/stable/index.html documentation: https://cnvkit.readthedocs.io/en/stable/index.html licence: ["Apache-2.0"] -params: - - outdir: - type: string - description: | - The pipeline's output directory. By default, the module will - output files into `$params.outdir/` - - publish_dir_mode: - type: string - description: | - Value for the Nextflow `publishDir` mode parameter. - Available: symlink, rellink, link, copy, copyNoFollow, move. - - enable_conda: - type: boolean - description: | - Run the module with Conda using the software specified - via the `conda` directive - - singularity_pull_docker_container: - type: boolean - description: | - Instead of directly downloading Singularity images for use with Singularity, - force the workflow to pull and convert Docker containers instead. input: - meta: type: map @@ -49,7 +28,7 @@ input: - fasta: type: file description: | - Input reference genome fasta file + Input reference genome fasta file (only needed for cram_input and/or when normal_samples are provided) - targetfile: type: file description: |