From f392c4bed533ccacd0e79cca736666417e877ad0 Mon Sep 17 00:00:00 2001 From: SusiJo Date: Fri, 20 May 2022 13:05:43 +0200 Subject: [PATCH] removed params section & added description fasta --- modules/cnvkit/batch/meta.yml | 23 +---------------------- 1 file changed, 1 insertion(+), 22 deletions(-) diff --git a/modules/cnvkit/batch/meta.yml b/modules/cnvkit/batch/meta.yml index 03277e33..2cd675c7 100644 --- a/modules/cnvkit/batch/meta.yml +++ b/modules/cnvkit/batch/meta.yml @@ -11,27 +11,6 @@ tools: homepage: https://cnvkit.readthedocs.io/en/stable/index.html documentation: https://cnvkit.readthedocs.io/en/stable/index.html licence: ["Apache-2.0"] -params: - - outdir: - type: string - description: | - The pipeline's output directory. By default, the module will - output files into `$params.outdir/` - - publish_dir_mode: - type: string - description: | - Value for the Nextflow `publishDir` mode parameter. - Available: symlink, rellink, link, copy, copyNoFollow, move. - - enable_conda: - type: boolean - description: | - Run the module with Conda using the software specified - via the `conda` directive - - singularity_pull_docker_container: - type: boolean - description: | - Instead of directly downloading Singularity images for use with Singularity, - force the workflow to pull and convert Docker containers instead. input: - meta: type: map @@ -49,7 +28,7 @@ input: - fasta: type: file description: | - Input reference genome fasta file + Input reference genome fasta file (only needed for cram_input and/or when normal_samples are provided) - targetfile: type: file description: |