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Fix for version file output check when performing an expected error test (#1242)

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* hifiasm copied from fastqc

* hifiasm tests init from fastqc

* meta.yml init; test.yml and main.nf for printing version

* Add hifiasm version printing

* Removed spaced on an empty line

* Reverted hifiasm from main

* Ignores version file checking if testing for error

* Added comment

Co-authored-by: Sviatoslav Sidorov <sviatoslav.sidorov@crick.ac.uk>
Co-authored-by: Svyatoslav Sidorov <svet.sidorov@gmail.com>
Co-authored-by: Tamara Hodgetts <hodgett@crick.ac.uk>
This commit is contained in:
Chris Cheshire 2022-01-28 09:32:36 +00:00 committed by GitHub
parent a45e030166
commit f3a405e4f2
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1 changed files with 4 additions and 1 deletions
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5
tests/test_versions_yml.py
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@ -16,7 +16,10 @@ def _get_workflow_names():
# test_config = yaml.safe_load(f.read_text()) # test_config = yaml.safe_load(f.read_text())
test_config = yaml.load(f.read_text(), Loader=yaml.BaseLoader) test_config = yaml.load(f.read_text(), Loader=yaml.BaseLoader)
for workflow in test_config: for workflow in test_config:
yield workflow["name"] # https://github.com/nf-core/modules/pull/1242 - added to cover tests
# that expect an error and therefore will not generate a versions.yml
if 'exit_code' not in workflow:
yield workflow["name"]
@pytest.mark.workflow(*_get_workflow_names()) @pytest.mark.workflow(*_get_workflow_names())