diff --git a/modules/gatk4/getpileupsummaries/main.nf b/modules/gatk4/getpileupsummaries/main.nf index 67e9276c..1c056170 100644 --- a/modules/gatk4/getpileupsummaries/main.nf +++ b/modules/gatk4/getpileupsummaries/main.nf @@ -40,7 +40,7 @@ process GATK4_GETPILEUPSUMMARIES { --variant $variants \\ --output ${prefix}.pileups.table \\ $reference_command \\ - $sites_command \\ + $interval_command \\ --tmp-dir . \\ $args