From f48a24770e24358e58de66e9b805a70d77cd154b Mon Sep 17 00:00:00 2001
From: "Maxime U. Garcia" <max.u.garcia@gmail.com>
Date: Thu, 14 Jul 2022 11:42:00 +0200
Subject: [PATCH] more generic name because of multiple extension (#1880)

---
 modules/samtools/stats/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/samtools/stats/main.nf b/modules/samtools/stats/main.nf
index c913bc5e..89b92d79 100644
--- a/modules/samtools/stats/main.nf
+++ b/modules/samtools/stats/main.nf
@@ -8,7 +8,7 @@ process SAMTOOLS_STATS {
         'quay.io/biocontainers/samtools:1.15.1--h1170115_0' }"
 
     input:
-    tuple val(meta), path(bam), path(bai)
+    tuple val(meta), path(input), path(input_index)
     path fasta
 
     output:
@@ -27,7 +27,7 @@ process SAMTOOLS_STATS {
         stats \\
         --threads ${task.cpus-1} \\
         ${reference} \\
-        ${bam} \\
+        ${input} \\
         > ${prefix}.stats
 
     cat <<-END_VERSIONS > versions.yml