diff --git a/tests/software/bcftools/bgzip/test.yml b/tests/software/bcftools/bgzip/test.yml index 17c4b4d4..b8b69258 100644 --- a/tests/software/bcftools/bgzip/test.yml +++ b/tests/software/bcftools/bgzip/test.yml @@ -1,4 +1,4 @@ -- name: Run bcftools bgzip test workflow +- name: bcftools bgzip command: nextflow run ./tests/software/bcftools/bgzip -entry test_bcftools_bgzip -c tests/config/nextflow.config tags: - bcftools diff --git a/tests/software/bcftools/consensus/test.yml b/tests/software/bcftools/consensus/test.yml index 764db6f4..26384b3e 100644 --- a/tests/software/bcftools/consensus/test.yml +++ b/tests/software/bcftools/consensus/test.yml @@ -1,4 +1,4 @@ -- name: Run bcftools consensus test workflow +- name: bcftools consensus command: nextflow run ./tests/software/bcftools/consensus -entry test_bcftools_consensus -c tests/config/nextflow.config tags: - bcftools diff --git a/tests/software/bcftools/filter/test.yml b/tests/software/bcftools/filter/test.yml index bba7562b..a47d3cd5 100644 --- a/tests/software/bcftools/filter/test.yml +++ b/tests/software/bcftools/filter/test.yml @@ -1,4 +1,4 @@ -- name: Run bcftools filter test workflow +- name: bcftools filter command: nextflow run ./tests/software/bcftools/filter -entry test_bcftools_filter -c tests/config/nextflow.config tags: - bcftools diff --git a/tests/software/bcftools/isec/test.yml b/tests/software/bcftools/isec/test.yml index 860846b6..8955521e 100644 --- a/tests/software/bcftools/isec/test.yml +++ b/tests/software/bcftools/isec/test.yml @@ -1,4 +1,4 @@ -- name: Run bcftools isec test workflow +- name: bcftools isec command: nextflow run ./tests/software/bcftools/isec -entry test_bcftools_isec -c tests/config/nextflow.config tags: - bcftools diff --git a/tests/software/bcftools/stats/test.yml b/tests/software/bcftools/stats/test.yml index f7406a6b..fdab4904 100644 --- a/tests/software/bcftools/stats/test.yml +++ b/tests/software/bcftools/stats/test.yml @@ -1,4 +1,4 @@ -- name: Run bcftools bgzip test workflow +- name: bcftools stats command: nextflow run ./tests/software/bcftools/stats -entry test_bcftools_stats -c tests/config/nextflow.config tags: - bcftools diff --git a/tests/software/bcftools/tabix/main.nf b/tests/software/bcftools/tabix/main.nf index ec73e911..8a0f8ec6 100644 --- a/tests/software/bcftools/tabix/main.nf +++ b/tests/software/bcftools/tabix/main.nf @@ -2,14 +2,13 @@ nextflow.enable.dsl = 2 -include { BCFTOOLS_BGZIP } from '../../../../software/bcftools/bgzip/main.nf' addParams( options: [:] ) include { BCFTOOLS_TABIX } from '../../../../software/bcftools/tabix/main.nf' addParams( options: [:] ) workflow test_bcftools_tabix { def input = [] input = [ [ id:'test' ], // meta map - [ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true) ] + [ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true) ] ] BCFTOOLS_TABIX ( input ) } diff --git a/tests/software/bcftools/tabix/test.yml b/tests/software/bcftools/tabix/test.yml index e378f316..0356b1a8 100644 --- a/tests/software/bcftools/tabix/test.yml +++ b/tests/software/bcftools/tabix/test.yml @@ -1,4 +1,4 @@ -- name: Run bcftools tabix test workflow +- name: bcftools tabix command: nextflow run ./tests/software/bcftools/tabix -entry test_bcftools_tabix -c tests/config/nextflow.config tags: - bcftools