From f8882de45613b8afe068d9a8d6df86c35cc95854 Mon Sep 17 00:00:00 2001
From: JoseEspinosa <kadomu@gmail.com>
Date: Mon, 8 Feb 2021 21:56:53 +0100
Subject: [PATCH] Renaming test ymls just to: software tool

---
 tests/software/bcftools/bgzip/test.yml     | 2 +-
 tests/software/bcftools/consensus/test.yml | 2 +-
 tests/software/bcftools/filter/test.yml    | 2 +-
 tests/software/bcftools/isec/test.yml      | 2 +-
 tests/software/bcftools/stats/test.yml     | 2 +-
 tests/software/bcftools/tabix/main.nf      | 3 +--
 tests/software/bcftools/tabix/test.yml     | 2 +-
 7 files changed, 7 insertions(+), 8 deletions(-)

diff --git a/tests/software/bcftools/bgzip/test.yml b/tests/software/bcftools/bgzip/test.yml
index 17c4b4d4..b8b69258 100644
--- a/tests/software/bcftools/bgzip/test.yml
+++ b/tests/software/bcftools/bgzip/test.yml
@@ -1,4 +1,4 @@
-- name: Run bcftools bgzip test workflow
+- name: bcftools bgzip
   command: nextflow run ./tests/software/bcftools/bgzip -entry test_bcftools_bgzip -c tests/config/nextflow.config
   tags:
     - bcftools
diff --git a/tests/software/bcftools/consensus/test.yml b/tests/software/bcftools/consensus/test.yml
index 764db6f4..26384b3e 100644
--- a/tests/software/bcftools/consensus/test.yml
+++ b/tests/software/bcftools/consensus/test.yml
@@ -1,4 +1,4 @@
-- name: Run bcftools consensus test workflow
+- name: bcftools consensus
   command: nextflow run ./tests/software/bcftools/consensus -entry test_bcftools_consensus -c tests/config/nextflow.config
   tags:
     - bcftools
diff --git a/tests/software/bcftools/filter/test.yml b/tests/software/bcftools/filter/test.yml
index bba7562b..a47d3cd5 100644
--- a/tests/software/bcftools/filter/test.yml
+++ b/tests/software/bcftools/filter/test.yml
@@ -1,4 +1,4 @@
-- name: Run bcftools filter test workflow
+- name: bcftools filter
   command: nextflow run ./tests/software/bcftools/filter -entry test_bcftools_filter -c tests/config/nextflow.config
   tags:
     - bcftools
diff --git a/tests/software/bcftools/isec/test.yml b/tests/software/bcftools/isec/test.yml
index 860846b6..8955521e 100644
--- a/tests/software/bcftools/isec/test.yml
+++ b/tests/software/bcftools/isec/test.yml
@@ -1,4 +1,4 @@
-- name: Run bcftools isec test workflow
+- name: bcftools isec
   command: nextflow run ./tests/software/bcftools/isec -entry test_bcftools_isec -c tests/config/nextflow.config
   tags:
     - bcftools
diff --git a/tests/software/bcftools/stats/test.yml b/tests/software/bcftools/stats/test.yml
index f7406a6b..fdab4904 100644
--- a/tests/software/bcftools/stats/test.yml
+++ b/tests/software/bcftools/stats/test.yml
@@ -1,4 +1,4 @@
-- name: Run bcftools bgzip test workflow
+- name: bcftools stats
   command: nextflow run ./tests/software/bcftools/stats -entry test_bcftools_stats -c tests/config/nextflow.config
   tags:
     - bcftools
diff --git a/tests/software/bcftools/tabix/main.nf b/tests/software/bcftools/tabix/main.nf
index ec73e911..8a0f8ec6 100644
--- a/tests/software/bcftools/tabix/main.nf
+++ b/tests/software/bcftools/tabix/main.nf
@@ -2,14 +2,13 @@
 
 nextflow.enable.dsl = 2
 
-include { BCFTOOLS_BGZIP } from '../../../../software/bcftools/bgzip/main.nf' addParams( options: [:] )
 include { BCFTOOLS_TABIX } from '../../../../software/bcftools/tabix/main.nf' addParams( options: [:] )
 
 workflow test_bcftools_tabix {
 
     def input = []
     input = [ [ id:'test' ], // meta map
-              [ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true) ]
+              [ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true) ] ]
 
     BCFTOOLS_TABIX ( input )
 }
diff --git a/tests/software/bcftools/tabix/test.yml b/tests/software/bcftools/tabix/test.yml
index e378f316..0356b1a8 100644
--- a/tests/software/bcftools/tabix/test.yml
+++ b/tests/software/bcftools/tabix/test.yml
@@ -1,4 +1,4 @@
-- name: Run bcftools tabix test workflow
+- name: bcftools tabix
   command: nextflow run ./tests/software/bcftools/tabix -entry test_bcftools_tabix -c tests/config/nextflow.config
   tags:
     - bcftools