diff --git a/.github/workflows/bwa_index.yml b/.github/workflows/bwa_index.yml
index 609fde64..a2cfe096 100644
--- a/.github/workflows/bwa_index.yml
+++ b/.github/workflows/bwa_index.yml
@@ -1,36 +1,36 @@
 name: bwa_index
 on:
-    push:
-        paths:
-            - software/bwa/index/**
-            - .github/workflows/bwa_index.yml
-            - tests/software/bwa/**
-    pull_request:
-        paths:
-            - software/bwa/index/**
-            - .github/workflows/bwa_index.yml
-            - tests/software/bwa/**
+  push:
+    paths:
+      - software/bwa/index/**
+      - .github/workflows/software/bwa_index.yml
+      - tests/software/bwa/**
+  pull_request:
+    paths:
+      - software/bwa/index/**
+      - .github/workflows/software/bwa_index.yml
+      - tests/software/bwa/**
 
 jobs:
-    ci_test:
-        runs-on: ubuntu-latest
-        env:
-            NXF_ANSI_LOG: false
-        steps:
-            - uses: actions/checkout@v2
+  ci_test:
+    runs-on: ubuntu-latest
+    env:
+      NXF_ANSI_LOG: false
+    steps:
+      - uses: actions/checkout@v2
 
-            - name: Install Nextflow
-              run: |
-                  export NXF_VER="20.07.1"
-                  wget -qO- get.nextflow.io | bash
-                  sudo mv nextflow /usr/local/bin/
+      - name: Install Nextflow
+        run: |
+          export NXF_VER="20.07.1"
+          wget -qO- get.nextflow.io | bash
+          sudo mv nextflow /usr/local/bin/
 
-            - name: Set up Python
-              uses: actions/setup-python@v2
-              with:
-                  python-version: "3.x"
-            - name: Install dependencies
-              run: python -m pip install --upgrade pip pytest-workflow
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.x"
+      - name: Install dependencies
+        run: python -m pip install --upgrade pip pytest-workflow
 
-            # Test the module
-            - run: pytest --tag bwa_index --symlink --wt 2
+      # Test the module
+      - run: pytest --tag bwa_index --symlink --wt 2
diff --git a/.github/workflows/multiqc.yml b/.github/workflows/multiqc.yml
index 37a830bd..49f39d2e 100644
--- a/.github/workflows/multiqc.yml
+++ b/.github/workflows/multiqc.yml
@@ -17,22 +17,20 @@ jobs:
     env:
       NXF_ANSI_LOG: false
     steps:
+      - uses: actions/checkout@v2
 
-    - uses: actions/checkout@v2
+      - name: Install Nextflow
+        run: |
+          export NXF_VER="20.07.1"
+          wget -qO- get.nextflow.io | bash
+          sudo mv nextflow /usr/local/bin/
 
-    - name: Install Nextflow
-      run: |
-        export NXF_VER="20.07.1"
-        wget -qO- get.nextflow.io | bash
-        sudo mv nextflow /usr/local/bin/
-
-    - name: Set up Python
-      uses: actions/setup-python@v2
-      with:
-        python-version: "3.x"
-    - name: Install dependencies
-      run: python -m pip install --upgrade pip pytest-workflow
-
-    # Test the module
-    - run: pytest --tag multiqc --symlink --wt 2
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.x"
+      - name: Install dependencies
+        run: python -m pip install --upgrade pip pytest-workflow
 
+      # Test the module
+      - run: pytest --tag multiqc --symlink --wt 2
diff --git a/.github/workflows/picard_collectmultiplemetrics.yml b/.github/workflows/picard_collectmultiplemetrics.yml
index b9176d72..945f7cfc 100644
--- a/.github/workflows/picard_collectmultiplemetrics.yml
+++ b/.github/workflows/picard_collectmultiplemetrics.yml
@@ -1,4 +1,4 @@
-name: picard_collectmultiplemetrics.yml
+name: picard_collectmultiplemetrics
 on:
   push:
     paths: