From 5db94ea0ee8f80319e307ecf89b121e82e8c2ba8 Mon Sep 17 00:00:00 2001 From: SusiJo Date: Tue, 24 May 2022 10:17:41 +0200 Subject: [PATCH 1/2] changed tag of module --- modules/cnvkit/reference/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/cnvkit/reference/main.nf b/modules/cnvkit/reference/main.nf index 1f0b20d8..992d768f 100644 --- a/modules/cnvkit/reference/main.nf +++ b/modules/cnvkit/reference/main.nf @@ -1,5 +1,5 @@ process CNVKIT_REFERENCE { - tag "$reference" + tag "$fasta" label 'process_low' conda (params.enable_conda ? "bioconda::cnvkit=0.9.9" : null) From 29a4f112be0a28006af99564a149711a9e08af91 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Tue, 24 May 2022 11:14:32 +0100 Subject: [PATCH 2/2] Update main.nf --- modules/cnvkit/reference/main.nf | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/modules/cnvkit/reference/main.nf b/modules/cnvkit/reference/main.nf index 992d768f..71d9ed28 100644 --- a/modules/cnvkit/reference/main.nf +++ b/modules/cnvkit/reference/main.nf @@ -8,20 +8,19 @@ process CNVKIT_REFERENCE { 'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }" input: - path fasta - path targets - path antitargets + path fasta + path targets + path antitargets output: - path("*.cnn") , emit: cnn - path "versions.yml" , emit: versions + path "*.cnn" , emit: cnn + path "versions.yml", emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' - """ cnvkit.py \\ reference \\